Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20527496_20530599_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20527496 - 20530599

Intron Length:

3104

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGCTGCC

5'SS Class:

major

3'SS Sequence:

CATTGTGGTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTAAAT

U12 Branch Point Sequence:

GTATGCTTCATT

Flanking Amino Acid:

SASLIFLHGSGDTGQGARTW

Intron Amino Acid Position:

122

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.3

0.41

1.2

62.1

38.4

Major BPS

69.8

0.49

1.1

75.5

35.2

Major PPT

67.4

0.39

1.1

60.4

44.6

Minor 5ss

32.7

-2

3.4

44.1

43.8

Minor BPS

51.3

0.12

2.2

73.32

43.8

Associated Gene:

Gene:

LYPLAL1

Ensembl Gene ID:

ENSAPLG00000019149

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035482

20526932 - 20553991

27060