Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20530700_20540788_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20530700 - 20540788

Intron Length:

10089

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTGCAC

5'SS Class:

major

3'SS Sequence:

TTTCCTTCTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATCAT

U12 Branch Point Sequence:

GCTTCATTAATC

Flanking Amino Acid:

IKVIYPTAPARPYTPMKGAF

Intron Amino Acid Position:

155

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

1.1

58.5

40.4

Major BPS

80.4

0.76

80.3

31.8

Major PPT

84.3

0.77

0.7

77.7

31.1

Minor 5ss

37.2

-1.4

3.3

50.1

46.5

Minor BPS

67.3

0.52

1.6

72.34

38.8

Associated Gene:

Gene:

LYPLAL1

Ensembl Gene ID:

ENSAPLG00000019149

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035482

20526932 - 20553991

27060