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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20540959_20553014_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20540959 - 20553014
Intron Length:
12056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTGCATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTGTTGCATT
Flanking Amino Acid:
NGIAKNRILIGGFSMGGGMA
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79
35.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
73.4
0.53
0.9
67.2
39.1
Minor 5ss
36.5
-1.5
3.2
50.8
45.8
Minor BPS
47.8
-0
2.3
76.06
41.4

Associated Gene:

Gene:
LYPLAL1
Ensembl Gene ID:
ENSAPLG00000019149
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035482
20526932 - 20553991
27060