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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20612122_20627012_F

Intron Information:

Intron Rank:
148246
Intron Class:
major
Intron Phase:
Intron Coordinates:
20612122 - 20627012
Intron Length:
14891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTATCTTCATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.5
0.73
0.8
76.8
31.4
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
46.2
-0.2
2
64.48
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029827
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028291
20611927 - 20655046
43120