Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20622084_20624665_F

Intron Information:

Intron Rank:

148241

Intron Class:

major

Intron Phase:

Intron Coordinates:

20622084 - 20624665

Intron Length:

2582

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTAAGTGCC

5'SS Class:

major

3'SS Sequence:

ATCTTTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGGTGAC

U12 Branch Point Sequence:

TTGCCCAGTATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.5

0.55

1.1

68.5

37.9

Major BPS

56.2

0.15

1.3

48.8

46.3

Major PPT

87.2

0.84

0.7

85.1

Minor 5ss

35.9

-1.6

3.2

45.9

42.3

Minor BPS

45.5

-0.2

67.47

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029827

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018843

20621608 - 20655046

33439

ENSAPLT00000039029

20621608 - 20656894

35287

ENSAPLT00000029431

20621608 - 20655064

33457