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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20626798_20630691_R

Intron Information:

Intron Rank:
129648
Intron Class:
major
Intron Phase:
Intron Coordinates:
20626798 - 20630691
Intron Length:
3894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGAACC
5'SS Class:
major
3'SS Sequence:
TCCTTTCACTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGCCTCTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
63.4
41.4
Major BPS
80
0.75
1
78.6
31
Major PPT
77.8
0.62
0.8
76.9
30.7
Minor 5ss
32.9
-1.9
3.1
36.2
40.5
Minor BPS
67.2
0.54
1.2
69
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016918
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023138
20624510 - 20631618
7109