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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20646103_20646757_F

Intron Information:

Intron Rank:
148244
Intron Class:
major
Intron Phase:
Intron Coordinates:
20646103 - 20646757
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATGTTG
5'SS Class:
major
3'SS Sequence:
ATCTTCTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
GTTTTTCTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
65
41.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
83
0.74
0.8
76.9
31.2
Minor 5ss
40.6
-1.1
3.3
52.4
45.8
Minor BPS
53
0.17
1.9
76.81
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029827
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029381
20627013 - 20647651
20639
ENSAPLT00000028291
20611927 - 20655046
43120
ENSAPLT00000018843
20621608 - 20655046
33439
ENSAPLT00000048071
20645800 - 20647651
1852