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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20807959_20808698_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20807959 - 20808698
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
TTATGTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TTTGTCTTATGT
Flanking Amino Acid:
VPKGVNMQLLTDRLARVPGV
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
67.9
39.2
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
85
0.79
0.9
77.1
41.8
Minor 5ss
34.8
-1.7
2.9
37.7
40.9
Minor BPS
55.9
0.26
2
78.81
43.9

Associated Gene:

Gene:
SLC30A10
Ensembl Gene ID:
ENSAPLG00000022144
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041664
20806528 - 20813529
7002