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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20836056_20836410_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20836056 - 20836410
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTATATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTATTATAATG
Flanking Amino Acid:
VLPPRVACVQVVIIPCGITN
Intron Amino Acid Position:
1539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
80.6
0.69
0.9
74.3
39.8
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
54.5
0
1.7
64.3
38.1

Associated Gene:

Gene:
EPRS1
Ensembl Gene ID:
ENSAPLG00000003240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021002
20828718 - 20866428
37711
ENSAPLT00000003386
20828718 - 20866428
37711
ENSAPLT00000034827
20828718 - 20866428
37711
ENSAPLT00000030320
20828947 - 20866428
37482
ENSAPLT00000029357
20828718 - 20866428
37711