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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20842025_20842874_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20842025 - 20842874
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAACAG
5'SS Class:
major
3'SS Sequence:
ATCCTCCCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGCTATTTATCC
Flanking Amino Acid:
RRLKAEKASKDEIDEAVKLL
Intron Amino Acid Position:
1083

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
56
43
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.6
0.51
0.8
66.1
29.5
Minor 5ss
29.6
-2.3
3.3
38.4
46.6
Minor BPS
52.5
0.06
1.8
63.75
41.9

Associated Gene:

Gene:
EPRS1
Ensembl Gene ID:
ENSAPLG00000003240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030320
20828947 - 20866428
37482
ENSAPLT00000003386
20828718 - 20866428
37711
ENSAPLT00000034827
20828718 - 20866428
37711