About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20842025_20843823_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20842025 - 20843823
Intron Length:
1799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTAATAG
5'SS Class:
major
3'SS Sequence:
ATCCTCCCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGCTATTTATCC
Flanking Amino Acid:
RKLKSEKASKDEIDEAVKLL
Intron Amino Acid Position:
1007

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1
59.7
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.6
0.51
0.8
66.1
29.5
Minor 5ss
37.3
-1.4
3.1
46.1
49.1
Minor BPS
52.5
0.06
1.8
63.75
41.9

Associated Gene:

Gene:
EPRS1
Ensembl Gene ID:
ENSAPLG00000003240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021002
20828718 - 20866428
37711