About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20842025_20844887_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20842025 - 20844887
Intron Length:
2863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGCTGAT
5'SS Class:
major
3'SS Sequence:
ATCCTCCCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGCTATTTATCC
Flanking Amino Acid:
RKLKAEKAPKDEIDEAVKLL
Intron Amino Acid Position:
930

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.2
68.4
38.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.6
0.51
0.8
66.1
29.5
Minor 5ss
33.1
-1.9
3.5
48.2
47.9
Minor BPS
52.5
0.06
1.8
63.75
41.9

Associated Gene:

Gene:
EPRS1
Ensembl Gene ID:
ENSAPLG00000003240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029357
20828718 - 20866428
37711