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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20846860_20847555_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20846860 - 20847555
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TTGCTCTCATCA
Flanking Amino Acid:
WGNIIITKLNRNSNGKILSI
Intron Amino Acid Position:
650

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
71.6
0.54
1
72
33.1
Major PPT
85.3
0.79
0.7
81.6
30.4
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
49.7
-0
1.8
64.7
41.7

Associated Gene:

Gene:
EPRS1
Ensembl Gene ID:
ENSAPLG00000003240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003386
20828718 - 20866428
37711
ENSAPLT00000034827
20828718 - 20866428
37711
ENSAPLT00000030320
20828947 - 20866428
37482
ENSAPLT00000029357
20828718 - 20866428
37711
ENSAPLT00000021002
20828718 - 20866428
37711