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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20849451_20851457_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20849451 - 20851457
Intron Length:
2007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTACTC
5'SS Class:
major
3'SS Sequence:
TTGTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATGATCC
Flanking Amino Acid:
NKKLRAICKKVIDPVAPRYT
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
64.4
39.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
84.8
0.78
0.7
81.6
30.4
Minor 5ss
42.7
-0.8
3.1
59.9
44.6
Minor BPS
52.3
0.05
2
70.29
40.3

Associated Gene:

Gene:
EPRS1
Ensembl Gene ID:
ENSAPLG00000003240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030320
20828947 - 20866428
37482
ENSAPLT00000029357
20828718 - 20866428
37711
ENSAPLT00000021002
20828718 - 20866428
37711
ENSAPLT00000034827
20828718 - 20866428
37711