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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20849451_20851776_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20849451 - 20851776
Intron Length:
2326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATGATCC
Flanking Amino Acid:
WDKIWSFNKKVIDPVAPRYT
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
77.9
36.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
84.8
0.78
0.7
81.6
30.4
Minor 5ss
48.4
-0.1
3.2
72.7
44.5
Minor BPS
52.3
0.05
2
70.29
40.3

Associated Gene:

Gene:
EPRS1
Ensembl Gene ID:
ENSAPLG00000003240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003386
20828718 - 20866428
37711