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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20851837_20852138_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20851837 - 20852138
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATGGATG
Flanking Amino Acid:
EGLKQFIAAQGSSRSVVNME
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
86.9
30.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
34.8
-1.7
3.2
50.1
46.4
Minor BPS
50.2
-0.1
1.8
61.54
40.2

Associated Gene:

Gene:
EPRS1
Ensembl Gene ID:
ENSAPLG00000003240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021002
20828718 - 20866428
37711
ENSAPLT00000003386
20828718 - 20866428
37711
ENSAPLT00000034827
20828718 - 20866428
37711
ENSAPLT00000030320
20828947 - 20866428
37482
ENSAPLT00000029357
20828718 - 20866428
37711