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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20853151_20853600_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20853151 - 20853600
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTCA
5'SS Class:
major
3'SS Sequence:
CTTTATTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
AGGTCTTTATTT
Flanking Amino Acid:
QPHPRTGSTYKVYPTYDFAC
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
73.1
31.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
76.8
0.6
1
75.2
38.5
Minor 5ss
48.3
-0.2
2.3
59
39.8
Minor BPS
59.1
0.36
1.6
70.66
41

Associated Gene:

Gene:
EPRS1
Ensembl Gene ID:
ENSAPLG00000003240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003386
20828718 - 20866428
37711
ENSAPLT00000034827
20828718 - 20866428
37711
ENSAPLT00000030320
20828947 - 20866428
37482
ENSAPLT00000029357
20828718 - 20866428
37711
ENSAPLT00000021002
20828718 - 20866428
37711