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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20854906_20855473_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20854906 - 20855473
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATAA
5'SS Class:
strong_major
3'SS Sequence:
TCACACTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
CTTTCTAGAATA
Flanking Amino Acid:
PEKEKEDFEKVILEDVAMLH
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
75.7
29.3
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
75.7
0.58
0.9
68.4
36.9
Minor 5ss
43.3
-0.7
2.8
55.5
48.7
Minor BPS
54.5
0.14
1.7
68.86
37.8

Associated Gene:

Gene:
EPRS1
Ensembl Gene ID:
ENSAPLG00000003240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021002
20828718 - 20866428
37711
ENSAPLT00000003386
20828718 - 20866428
37711
ENSAPLT00000034827
20828718 - 20866428
37711
ENSAPLT00000030320
20828947 - 20866428
37482
ENSAPLT00000029357
20828718 - 20866428
37711