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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20861009_20864147_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20861009 - 20864147
Intron Length:
3139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATACCTTTATT
Flanking Amino Acid:
EGKETILRVSENVSFTDVNS
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
69.5
35.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
92.2
0.95
0.5
92.5
17.5
Minor 5ss
34.3
-1.8
3.2
40
40.1
Minor BPS
67.2
0.62
1.6
82
39.5

Associated Gene:

Gene:
EPRS1
Ensembl Gene ID:
ENSAPLG00000003240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021002
20828718 - 20866428
37711
ENSAPLT00000003386
20828718 - 20866428
37711
ENSAPLT00000034827
20828718 - 20866428
37711
ENSAPLT00000030320
20828947 - 20866428
37482
ENSAPLT00000029357
20828718 - 20866428
37711