About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20864233_20866175_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20864233 - 20866175
Intron Length:
1943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCGCG
5'SS Class:
major
3'SS Sequence:
TTCCTTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TCCTTTTTAAAG
Flanking Amino Acid:
LTVAAGSAPLGALLTVEHVK
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
61
44
Major BPS
69.6
0.49
1
59.5
39
Major PPT
79.7
0.67
1
81.4
27.9
Minor 5ss
37.1
-1.5
3.3
48.8
46.9
Minor BPS
59.5
0.16
1.5
59.29
43.1

Associated Gene:

Gene:
EPRS1
Ensembl Gene ID:
ENSAPLG00000003240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029357
20828718 - 20866428
37711
ENSAPLT00000021002
20828718 - 20866428
37711
ENSAPLT00000003386
20828718 - 20866428
37711
ENSAPLT00000034827
20828718 - 20866428
37711
ENSAPLT00000030320
20828947 - 20866428
37482