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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20870238_20871579_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20870238 - 20871579
Intron Length:
1342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGAAAT
U12 Branch Point Sequence:
ATTTGCTGGAAT
Flanking Amino Acid:
APEAILHAVGGKITDIHGNS
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
58.4
0.21
1.2
65
38.7
Major PPT
87.1
0.84
0.8
84.6
36
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
49.9
0.07
2.1
75.52
40.9

Associated Gene:

Gene:
BPNT1
Ensembl Gene ID:
ENSAPLG00000003825
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003952
20870089 - 20879370
9282