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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20871686_20872559_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20871686 - 20872559
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCATATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGCAATGATT
Flanking Amino Acid:
VIRVGGAGNKIIQLIEGKAS
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
100
1.24
0.5
100
0
Major PPT
72.8
0.51
0.9
72.3
37.7
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
49.8
0.07
2
77.26
39.3

Associated Gene:

Gene:
BPNT1
Ensembl Gene ID:
ENSAPLG00000003825
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003952
20870089 - 20879370
9282