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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20878784_20879200_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
20878784 - 20879200
Intron Length:
417

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCTGGTATT
5'SS Class:
major
3'SS Sequence:
AAATAGGAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCAAAATTAATT
Flanking Amino Acid:
SSTSFIKIRVKPEITIICVK
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.3
78.3
36.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
46.4
-0.2
1.1
33.5
39.6
Minor 5ss
28
-2.5
4
43.6
37.7
Minor BPS
49.9
0.08
1.8
68.07
42.4

Associated Gene:

Gene:
BPNT1
Ensembl Gene ID:
ENSAPLG00000003825
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003952
20870089 - 20879370
9282