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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20881655_20881784_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20881655 - 20881784
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGTTG
5'SS Class:
major
3'SS Sequence:
CTTCTCTCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTGAG
U12 Branch Point Sequence:
CTGTGCTTCTCT
Flanking Amino Acid:
QPDTELETQQKSGFSALYAW
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
66.5
41.6
Major BPS
43.9
-0.3
1.6
36.8
44.4
Major PPT
81.5
0.71
0.7
76.7
25.3
Minor 5ss
33.5
-1.9
3.6
45.4
49.7
Minor BPS
37.9
-0.8
3.7
66.94
49.6

Associated Gene:

Gene:
IARS2
Ensembl Gene ID:
ENSAPLG00000004136
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004305
20881427 - 20911523
30097