Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20881908_20882909_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20881908 - 20882909

Intron Length:

1002

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAAGGCG

5'SS Class:

major

3'SS Sequence:

TCTGTCTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAC

U12 Branch Point Sequence:

GCTAACTGACCC

Flanking Amino Acid:

DPHVGHALNKILKDITNRFY

Intron Amino Acid Position:

118

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.1

0.43

1.1

57.5

Major BPS

69.4

0.48

1.1

69.6

35.5

Major PPT

86.8

0.83

0.7

84.4

30.5

Minor 5ss

30.6

-2.2

3.6

38.5

Minor BPS

44.8

-0.4

1.9

43.1

Associated Gene:

Gene:

IARS2

Ensembl Gene ID:

ENSAPLG00000004136

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004305

20881427 - 20911523

30097