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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20884081_20884162_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20884081 - 20884162
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTCTCTTAACT
Flanking Amino Acid:
LRVFHKMYDKGFIYQDYKPV
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.6
40.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
76.5
0.6
0.7
74.1
24.1
Minor 5ss
49.3
-0
2.5
64.8
46.5
Minor BPS
82.2
1.09
1
91.82
30

Associated Gene:

Gene:
IARS2
Ensembl Gene ID:
ENSAPLG00000004136
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004305
20881427 - 20911523
30097