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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20884213_20884310_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20884213 - 20884310
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
GATATCTACCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
AGTTTGATATCT
Flanking Amino Acid:
YKPVFWSPSAKTALAEAELE
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
81.8
29.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
64.5
0.33
1
55.1
44.5
Minor 5ss
39.7
-1.1
3.1
53.3
37.6
Minor BPS
44
-0.3
2.4
67.66
43

Associated Gene:

Gene:
IARS2
Ensembl Gene ID:
ENSAPLG00000004136
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004305
20881427 - 20911523
30097