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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20885081_20886082_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20885081 - 20886082
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCACACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTTCTCCACA
Flanking Amino Acid:
TQFEVISTCKGTDLADGSCA
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.9
29.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
71.3
0.48
0.9
64.2
36.6
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
61.2
0.35
2
79.1
37.4

Associated Gene:

Gene:
IARS2
Ensembl Gene ID:
ENSAPLG00000004136
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004305
20881427 - 20911523
30097