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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20887295_20887508_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20887295 - 20887508
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCACTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CATTTTTTCACT
Flanking Amino Acid:
KNVLEEGNEAVIKMLQAAGS
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
85.6
0.8
0.8
85.6
27.8
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
60.1
0.4
1.8
75.92
41.3

Associated Gene:

Gene:
IARS2
Ensembl Gene ID:
ENSAPLG00000004136
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004305
20881427 - 20911523
30097