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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20888779_20898236_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20888779 - 20898236
Intron Length:
9458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTATC
5'SS Class:
strong_major
3'SS Sequence:
CCCTGCTAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTCATAAAAC
Flanking Amino Acid:
QKNTGESLINSETITDVIKI
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
79.8
33.2
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
62.8
0.29
1
57.6
36.5
Minor 5ss
46.5
-0.4
2.5
63.1
41.4
Minor BPS
49.7
-0
2
64.95
39.8

Associated Gene:

Gene:
IARS2
Ensembl Gene ID:
ENSAPLG00000004136
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004305
20881427 - 20911523
30097