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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20904713_20905748_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20904713 - 20905748
Intron Length:
1036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TCTTCTCTAAAA
Flanking Amino Acid:
SVATRKKAPFKTLVVHGFTL
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
73
0.57
1
73.6
28.6
Major PPT
83.8
0.76
0.7
82.1
29.1
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
60.8
0.33
1.8
73.18
38.6

Associated Gene:

Gene:
IARS2
Ensembl Gene ID:
ENSAPLG00000004136
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004305
20881427 - 20911523
30097