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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20905852_20906832_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20905852 - 20906832
Intron Length:
981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TATCTCTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
GCCTTTCTATCT
Flanking Amino Acid:
DPDVVVNGGEDHTKDPPYGA
Intron Amino Acid Position:
671

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
77
33.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
70.5
0.46
0.9
69.8
36.2
Minor 5ss
35.2
-1.7
2.9
41.4
39.1
Minor BPS
45.8
-0.2
1.9
60.14
43.9

Associated Gene:

Gene:
IARS2
Ensembl Gene ID:
ENSAPLG00000004136
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004305
20881427 - 20911523
30097