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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20906959_20907356_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20906959 - 20907356
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGTTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAG
U12 Branch Point Sequence:
AAACCATCAATA
Flanking Amino Acid:
LNAARDDINKLRNTLRFMLG
Intron Amino Acid Position:
713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
64.7
0.37
1.5
63.7
43.9
Major PPT
73
0.52
0.9
65.3
41.1
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
47.4
-0.2
1.7
55.72
36.1

Associated Gene:

Gene:
IARS2
Ensembl Gene ID:
ENSAPLG00000004136
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004305
20881427 - 20911523
30097