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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20908254_20909221_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20908254 - 20909221
Intron Length:
968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGATACTAACA
Flanking Amino Acid:
SNFYFSIIKDRLYCEEEKDP
Intron Amino Acid Position:
792

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.2
1.14
0.6
93.2
14.5
Major BPS
100
1.24
0.5
100
0
Major PPT
83.2
0.75
0.8
80.3
31.8
Minor 5ss
43.8
-0.7
2.8
58.1
46.5
Minor BPS
47
-0.2
1.9
60.38
39

Associated Gene:

Gene:
IARS2
Ensembl Gene ID:
ENSAPLG00000004136
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004305
20881427 - 20911523
30097