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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20909725_20911079_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20909725 - 20911079
Intron Length:
1355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TGAAAATTAACT
Flanking Amino Acid:
EPGLLFELMEALQAEESSSV
Intron Amino Acid Position:
905

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.2
33.8
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
75.6
0.58
0.7
69
31.5
Minor 5ss
43.2
-0.7
2.9
57.8
46.8
Minor BPS
54.4
0.22
1.8
73.56
42

Associated Gene:

Gene:
IARS2
Ensembl Gene ID:
ENSAPLG00000004136
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004305
20881427 - 20911523
30097