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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20911225_20911371_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20911225 - 20911371
Intron Length:
147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
AATCTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTGCACTTAATG
Flanking Amino Acid:
IKGTFLINLEGGDIREESSY
Intron Amino Acid Position:
953

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
80
0.75
1
78.6
31
Major PPT
82.9
0.74
0.8
76.6
36.6
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
55.8
0.04
1.7
57.62
44.1

Associated Gene:

Gene:
IARS2
Ensembl Gene ID:
ENSAPLG00000004136
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004305
20881427 - 20911523
30097