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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20915550_20916618_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20915550 - 20916618
Intron Length:
1069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATTTCTCTATTT
Flanking Amino Acid:
SYGMDHLGEEAFLQVTDKEV
Intron Amino Acid Position:
1281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.3
32.4
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
87
0.83
0.7
84.7
28.8
Minor 5ss
33.8
-1.8
2.8
42
44.2
Minor BPS
56.1
0.27
1.9
78.83
37.8

Associated Gene:

Gene:
RAB3GAP2
Ensembl Gene ID:
ENSAPLG00000004958
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005191
20913761 - 20958232
44472