About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20915550_20916921_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20915550 - 20916921
Intron Length:
1372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATTTCTCTATTT
Flanking Amino Acid:
DQSVLSIRQQAFLQVTDKEV
Intron Amino Acid Position:
1187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
87.1
30
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
87
0.83
0.7
84.7
28.8
Minor 5ss
37.9
-1.4
3.1
50.4
46.1
Minor BPS
56.1
0.27
1.9
78.83
37.8

Associated Gene:

Gene:
RAB3GAP2
Ensembl Gene ID:
ENSAPLG00000004958
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025180
20913761 - 20947594
33834