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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20916838_20916921_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20916838 - 20916921
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TAATTTTTAACT
Flanking Amino Acid:
DQSVLSIRQQFLIKVVSAAV
Intron Amino Acid Position:
1208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
87.1
30
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
73.7
0.53
1
71.4
38.7
Minor 5ss
37.9
-1.4
3.1
50.4
46.1
Minor BPS
78
0.96
1
85.59
34.1

Associated Gene:

Gene:
RAB3GAP2
Ensembl Gene ID:
ENSAPLG00000004958
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005191
20913761 - 20958232
44472