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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20917012_20918320_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20917012 - 20918320
Intron Length:
1309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGGTTCTCAATT
Flanking Amino Acid:
VKPLSLFDSKGKNAFFKDLT
Intron Amino Acid Position:
1178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
38.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77.2
0.61
0.8
75
33.5
Minor 5ss
39.1
-1.2
3.3
58.7
45.8
Minor BPS
64
0.52
1.5
76.5
40.5

Associated Gene:

Gene:
RAB3GAP2
Ensembl Gene ID:
ENSAPLG00000004958
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025180
20913761 - 20947594
33834
ENSAPLT00000005191
20913761 - 20958232
44472