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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20932178_20932716_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20932178 - 20932716
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TATGAATTAATA
Flanking Amino Acid:
VLLKAKASDPDSIEAEAKEL
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
33.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
52.5
0.07
1.9
66.89
39.3

Associated Gene:

Gene:
RAB3GAP2
Ensembl Gene ID:
ENSAPLG00000004958
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025180
20913761 - 20947594
33834
ENSAPLT00000005191
20913761 - 20958232
44472