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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20932800_20933037_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20932800 - 20933037
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
GTTTTCTTCATA
Flanking Amino Acid:
TVHVPFHFALSDKKSERAKD
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.7
0.83
0.7
81
30.7
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
64.7
0.46
1.7
75.34
36.5

Associated Gene:

Gene:
RAB3GAP2
Ensembl Gene ID:
ENSAPLG00000004958
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025180
20913761 - 20947594
33834
ENSAPLT00000005191
20913761 - 20958232
44472