Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20935469_20936257_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20935469 - 20936257

Intron Length:

789

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAG|GCAAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

CTTTGATTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

TTTTCTTTGATT

Flanking Amino Acid:

KVEPATPLAVRFGLPDSRRH

Intron Amino Acid Position:

373

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.8

1.13

0.8

81.8

38.5

Major BPS

0.85

0.9

39.9

Major PPT

80.1

0.68

0.8

77.8

35.6

Minor 5ss

33.5

-1.9

48.7

47.5

Minor BPS

83.7

1.14

0.9

94.68

Associated Gene:

Gene:

RAB3GAP2

Ensembl Gene ID:

ENSAPLG00000004958

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025180

20913761 - 20947594

33834

ENSAPLT00000005191

20913761 - 20958232

44472