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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20970443_20970928_F

Intron Information:

Intron Rank:
145690
Intron Class:
major
Intron Phase:
Intron Coordinates:
20970443 - 20970928
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTGTA
5'SS Class:
major
3'SS Sequence:
TTTCATTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
ACTTTATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
71.6
33.7
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
83.1
0.74
0.7
81.8
29.8
Minor 5ss
33
-1.9
3.3
45.6
43.6
Minor BPS
70.2
0.71
1.6
83.15
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028511
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030962
20969705 - 20971329
1625