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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21006150_21008467_R

Intron Information:

Intron Rank:
148650
Intron Class:
major
Intron Phase:
Intron Coordinates:
21006150 - 21008467
Intron Length:
2318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACTGGG
5'SS Class:
major
3'SS Sequence:
TTGACTCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTCCTTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.1
67.1
44.6
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
71.4
0.48
0.9
62.5
39.6
Minor 5ss
37.6
-1.4
3.2
49.7
46.6
Minor BPS
80.7
1.05
1
92.82
28.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027426
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040213
21005843 - 21010553
4711
ENSAPLT00000019155
21005843 - 21008995
3153