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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21013738_21033955_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21013738 - 21033955
Intron Length:
20218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTCCA
5'SS Class:
major
3'SS Sequence:
ATTTGCCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATTACTAAATA
Flanking Amino Acid:
PTVNERDAENHTSVDGYTEP
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.3
67.6
39.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81
0.7
0.9
73.5
36.5
Minor 5ss
30.4
-2.2
2.8
32.9
34.4
Minor BPS
56.6
0.2
1.8
68.07
38.2

Associated Gene:

Gene:
MARK1
Ensembl Gene ID:
ENSAPLG00000005705
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045016
21013554 - 21068564
55011
ENSAPLT00000027596
21013554 - 21068564
55011
ENSAPLT00000005968
21013554 - 21068564
55011