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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21034160_21034870_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21034160 - 21034870
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATCCAT
U12 Branch Point Sequence:
TTTTTCCTCAAG
Flanking Amino Acid:
LARHVLTGREVAVKIIDKTQ
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.9
81.8
38.5
Major BPS
60.7
0.27
1.2
70.5
35.7
Major PPT
81
0.7
1
80.3
32.2
Minor 5ss
43.8
-0.7
3.2
64.9
46.4
Minor BPS
47.9
-0.3
2.2
64.91
42.8

Associated Gene:

Gene:
MARK1
Ensembl Gene ID:
ENSAPLG00000005705
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005968
21013554 - 21068564
55011
ENSAPLT00000045016
21013554 - 21068564
55011
ENSAPLT00000027596
21013554 - 21068564
55011