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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21042615_21043724_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21042615 - 21043724
Intron Length:
1110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGAGTC
5'SS Class:
major
3'SS Sequence:
ATTTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CTCTCATTCATT
Flanking Amino Acid:
IMKILNHPNIVKLFEVIETE
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
66
38.4
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
90.3
0.91
0.7
85.5
28.4
Minor 5ss
33.7
-1.9
3.7
46.5
43.6
Minor BPS
52
0.14
2.1
72.41
45

Associated Gene:

Gene:
MARK1
Ensembl Gene ID:
ENSAPLG00000005705
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005968
21013554 - 21068564
55011
ENSAPLT00000045016
21013554 - 21068564
55011
ENSAPLT00000027596
21013554 - 21068564
55011