Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21044847_21045912_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21044847 - 21045912

Intron Length:

1066

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGAAAT

5'SS Class:

strong_major

3'SS Sequence:

CATCTTGTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAC

U12 Branch Point Sequence:

TTTCACTGATCA

Flanking Amino Acid:

EKEARAKFRQIVSAVQYCHQ

Intron Amino Acid Position:

166

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.8

0.84

0.9

82.4

29.8

Major BPS

81.3

0.78

0.8

83.4

26.1

Major PPT

79.5

0.66

0.9

76.5

37.2

Minor 5ss

41.2

-1

2.9

57.1

47.2

Minor BPS

51.7

0.05

1.9

71.37

Associated Gene:

Gene:

MARK1

Ensembl Gene ID:

ENSAPLG00000005705

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045016

21013554 - 21068564

55011

ENSAPLT00000027596

21013554 - 21068564

55011

ENSAPLT00000005968

21013554 - 21068564

55011