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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_21045970_21049633_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21045970 - 21049633
Intron Length:
3664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTGT
5'SS Class:
major
3'SS Sequence:
ACTTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TCCTCTTTCACT
Flanking Amino Acid:
QKCIVHRDLKAENLLLDADM
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.7
43.7
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
80.5
0.69
0.7
78.2
29.9
Minor 5ss
44.2
-0.6
3.2
64.5
46.9
Minor BPS
65.6
0.57
1.8
78.9
44

Associated Gene:

Gene:
MARK1
Ensembl Gene ID:
ENSAPLG00000005705
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045016
21013554 - 21068564
55011
ENSAPLT00000027596
21013554 - 21068564
55011
ENSAPLT00000005968
21013554 - 21068564
55011